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I have setup an Action List to run on my pdf's and when I select multiple items and run it the last file stays open, what do I do to have the last pdf close automatically. In older versions of Pitstop it run the tasks on all selected pdf's and a completed status window pops up at the end with all pdf's closed.

I'm not sure I fully understand this issue. PitStop Pro does not do any batch processing, is there a possibility you may be confusing PitStop with Adobe Acrobat functionality here?